PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24339.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 440aa    MW: 47857.3 Da    PI: 6.0546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24339.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.63.9e-116774363374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               lLl+cAe+v+ ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL++r+ +s+ ++y+ l++++ +  +s++ ++al+ ++ +s
  mrna24339.1-v1.0-hybrid  77 GLLLQCAECVAMDNLHDASDLLPEISELSSPFGSSPERVGAYFAHALQTRVISSCLGTYSPLTTKTLTAAQSQRIFNALQSYNSIS 162
                              58************************************************************************************ PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P++kfsh+taNqaI +a+ege++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+
  mrna24339.1-v1.0-hybrid 163 PLVKFSHFTANQAIFQALEGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----STELLESTGRRLADFASSLGL 244
                              *************************************************************....99******************* PP

                     GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                              pfef++l  k  +  el++L +++ Ea++V++++  h l+d ++s       +L+ +  l+Pk+++vveq+++h s+sFl rf+ea
  mrna24339.1-v1.0-hybrid 245 PFEFHPLEGKIGSVAELSQLGIRSSEATVVHWMH--HCLYDVTGSDLA----TLRSLSLLRPKLITVVEQDLSH-SGSFLGRFVEA 323
                              ******988888888******************9..888877777777....**********************.899******** PP

                     GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                              l+yysalfd+l  +l ++s er++vE++l+g ei+n++a  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa+lll ++++
  mrna24339.1-v1.0-hybrid 324 LHYYSALFDALGDGLNADSLERHMVEQQLFGCEIRNILAVGGPKRTGEVK-VERWGEELKRVGFRPVSLGGNPAAQASLLLGMFPW 408
                              ********************************************998887.9********************************** PP

                     GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +gy++ ee+g+l lgWkd +L+++SaW+
  mrna24339.1-v1.0-hybrid 409 KGYTLVEENGCLKLGWKDLSLLTASAWQ 436
                              ***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.95849416IPR005202Transcription factor GRAS
PfamPF035141.3E-11377436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLQSLVPQSP IVTNPKNPTS SSSSSMKTKR VDRDDPDSAA DDPSSFTTKR PTFSREPTAE  60
PVEPVAEGES AGLKLLGLLL QCAECVAMDN LHDASDLLPE ISELSSPFGS SPERVGAYFA  120
HALQTRVISS CLGTYSPLTT KTLTAAQSQR IFNALQSYNS ISPLVKFSHF TANQAIFQAL  180
EGEDHVHVID LDIMQGLQWP GLFHILASRS KKIRSMRITG FGSSTELLES TGRRLADFAS  240
SLGLPFEFHP LEGKIGSVAE LSQLGIRSSE ATVVHWMHHC LYDVTGSDLA TLRSLSLLRP  300
KLITVVEQDL SHSGSFLGRF VEALHYYSAL FDALGDGLNA DSLERHMVEQ QLFGCEIRNI  360
LAVGGPKRTG EVKVERWGEE LKRVGFRPVS LGGNPAAQAS LLLGMFPWKG YTLVEENGCL  420
KLGWKDLSLL TASAWQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1628143724379Protein SCARECROW
5b3h_D1e-1628143724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24339.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467673.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2P6S0T30.0A0A2P6S0T3_ROSCH; Putative transcription factor GRAS family
STRINGXP_004303941.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]