PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24419.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 163aa    MW: 17669.2 Da    PI: 10.2086
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24419.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.6e-17109144134
                     GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs  nC++  Tp+WR gp g+k+LCnaCG++yrk +
  mrna24419.1-v1.0-hybrid 109 CSnfNCRAAATPMWRTGPLGPKSLCNACGIKYRKLK 144
                              55559****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-11103148No hitNo description
SMARTSM004017.1E-11105159IPR000679Zinc finger, GATA-type
CDDcd002021.65E-8108142No hitNo description
PfamPF003201.3E-14109145IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-12112145IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.396113141IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAALDLTLRL GLPTSTDPQV IPPQQFPLNI YAAPRWAQGF GYGASAGRAH ADEYSATMNL  60
TDFQRSIKEY CLLTVSITQG KVGGSKKRKT PHSDERPVVP RPEDRNRTCS NFNCRAAATP  120
MWRTGPLGPK SLCNACGIKY RKLKLKEKQR EVGASGEGSS SA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24419.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461845.17e-73PREDICTED: GATA transcription factor 20-like
STRINGXP_004296301.11e-66(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-16GATA transcription factor 29