PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24424.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 168aa    MW: 18132.3 Da    PI: 9.7758
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24424.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17113148134
                     GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C+  nC++++Tp+WR gp g+k+LCnaCG++yrk +
  mrna24424.1-v1.0-hybrid 113 CTniNCRASQTPMWRTGPLGPKSLCNACGIRYRKLK 148
                              66669****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-12108152No hitNo description
Gene3DG3DSA:3.30.50.105.8E-13109149IPR013088Zinc finger, NHR/GATA-type
SMARTSM004019.1E-9109157IPR000679Zinc finger, GATA-type
PfamPF003203.7E-15113149IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.528117145IPR000679Zinc finger, GATA-type
CDDcd002026.55E-10117146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDVSIDLTLT LGLPSANDSR VPRSPYQVNT SAAAGSQGFG SGASAGNAYE REYYDATSTI  60
MEFEQRSVSR EMKYCVIDVS ITKGKVGGSK KRKTPHSDER PVVPKPEDRN RRCTNINCRA  120
SQTPMWRTGP LGPKSLCNAC GIRYRKLKLK EKQGEGAYSG EGSSSAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24424.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462240.11e-118PREDICTED: GATA zinc finger domain-containing protein 10-like
STRINGXP_004296301.11e-120(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-16GATA transcription factor 29