PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24650.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 151aa    MW: 16308.3 Da    PI: 8.2018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24650.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-101155145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             ++i+++  r v f++Rr+g++KKA+ L    +  +a+ ++s+tg+
  mrna24650.1-v1.0-hybrid 11 EPISDYQSRMVAFTRRRTGLFKKAQKLEDISGSSIAIAVISETGQ 55
                             579****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-8362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.885363IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-14470IPR002100Transcription factor, MADS-box
CDDcd001201.30E-13462No hitNo description
PRINTSPR004042.9E-8525IPR002100Transcription factor, MADS-box
PfamPF003195.8E-121357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGSGKKKIDI EPISDYQSRM VAFTRRRTGL FKKAQKLEDI SGSSIAIAVI SETGQPYLHG  60
SPSLLERALA STTTAASSST ATSTTTFEAT GSSTTTAATG TFEELKALVN TEVEACTSPE  120
EKERLKRKLL DYISRLDEKL CESDRFSTRN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24650.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470988.11e-104PREDICTED: MADS-box transcription factor pvg4-like
TrEMBLA0A2P6Q3022e-50A0A2P6Q302_ROSCH; Putative transcription factor MADS-type1 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-09AGAMOUS-like 29