PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24821.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 125aa MW: 13802.9 Da PI: 10.7268

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24821.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6e-19	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl mrna24821.1-v1.0-hybrid 41 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 88 89****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-23	32	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.023	36	92	IPR017930	Myb domain
SMART	SM00717	7.9E-14	40	90	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-17	41	88	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.84E-23	42	117	IPR009057	Homeodomain-like
CDD	cd00167	6.83E-11	43	88	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-6	91	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MRNPSSSSSS GAKAKSSSAA AAGVSSSSSK TPCCVKVGLK RGPWTPEEDE LLANYIKKEG 60 EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIASD EEDLILRLHR LLGNRYVYHF 120 TPLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-15	39	116	5	81	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24821.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ989280	1e-164	JQ989280.1 Fragaria x ananassa transcription factor MYB5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295005.1	5e-77	PREDICTED: transcription repressor MYB5
Swissprot	Q38850	4e-51	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	S5FZE3	4e-59	S5FZE3_MALDO; MYB transcription factor
STRING	XP_004295005.1	2e-76	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-51	myb domain protein 5

Link Out ? help Back to Top
Phytozome	mrna24821.1-v1.0-hybrid

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]