PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24912.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 135aa MW: 15420 Da PI: 4.3225

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24912.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	83	103	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C+ Cg+++ + L++H+++ mrna24912.1-v1.0-hybrid 83 VCNFCGRRYETAAALEKHQKK 103 7******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MASLAGGEWR RSGGGDFLVE EAVNEDDEVV EEVEDEDDDE LVEEVVNEDD ETVEEEVEDE 60 DDDELVEEEA KKKKKKKKKD GVVCNFCGRR YETAAALEKH QKKYRMSYYK ICGKCKNKLL 120 CKGDYEVHRR GCKG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	78	KKKKKKKKK
2	72	78	KKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24912.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34476	2	2

Link Out ? help Back to Top
Phytozome	mrna24912.1-v1.0-hybrid