PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24916.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 121aa MW: 13842.9 Da PI: 10.1815

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24916.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.5	3.8e-07	57	106	3	49
FAR1 3 Yne.YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..te 49 Yn+ Y k +GFsvr+ ++kksk +gei++++f s ++e++ ++ t+ mrna24916.1-v1.0-hybrid 57 YNDiYTKAIGFSVRMGSNKKSKVTGEIIWKQFLTSYVPRKEKQMRHmrTQ 106 5544****************************988777766666653222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-5	56	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MGEQSSKEPT MNAVPTKNVP VENVVSAENL IAKNVVKEPK LQLGQEFESI EVAYYYYNDI 60 YTKAIGFSVR MGSNKKSKVT GEIIWKQFLT SYVPRKEKQM RHMRTQEGNN RRPWKKGIAE 120 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24916.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024155796.1	7e-25	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024199801.1	2e-26	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004309679.1	1e-83	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-06	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna24916.1-v1.0-hybrid