PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24932.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 463aa    MW: 49397.6 Da    PI: 8.8414
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24932.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-114571127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++ ++C +++rtG+C yG rC+++H++
  mrna24932.1-v1.0-hybrid 45 PGVPNCVYYMRTGFCGYGVRCRYNHPR 71
                             5789*********************96 PP
2zf-CCCH40.16e-1392116327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C+++++tGtCk+G++CkF+H++
  mrna24932.1-v1.0-hybrid  92 EPVCQYYLKTGTCKFGASCKFHHPK 116
                              789********************96 PP
3zf-CCCH37.73.3e-12137162227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++++tG+Ck+G +CkF+H++
  mrna24932.1-v1.0-hybrid 137 GESECSYYLKTGQCKFGLTCKFHHPQ 162
                              7899********************97 PP
4zf-CCCH35.91.3e-11293319127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C++++rtG Ck+G++C+++H++
  mrna24932.1-v1.0-hybrid 293 PGEPECQYYLRTGDCKFGPSCRYHHPR 319
                              5799*********************96 PP
5zf-CCCH35.91.3e-11340365227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +  +C f++++G+Ck+G++CkF H++
  mrna24932.1-v1.0-hybrid 340 GVQPCTFYLQNGHCKFGSSCKFDHPM 365
                              6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3574472IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-55071IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67689117IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-789116IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-594116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267135163IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5135162IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826292320IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6292319IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6296321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4298319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807338366IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6338365IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6340369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5342364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPEWSSG AAETGLEEQM WQLGLTSTES YPERPGVPNC VYYMRTGFCG  60
YGVRCRYNHP RDRAAVVAAV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGGG  120
SLTRAPLNIY GYPLRPGESE CSYYLKTGQC KFGLTCKFHH PQPAGTTVPA SAPQFYQSVQ  180
SPSVPMPEQF GGQSTGLRVA RPPLLPGSYV QGAYGPVLIP PGVVPIPSWN PYSAPLSPAL  240
SPGAQPTVGA TSLYGLTQLS SPPHALARPY TSVPSSVGPS SSSPNEQTFP ERPGEPECQY  300
YLRTGDCKFG PSCRYHHPRD RIAPRTNCLL SPVGLPLRPG VQPCTFYLQN GHCKFGSSCK  360
FDHPMGTMRY SPSASSLDMP VAPYPVGSLL GTLASSSSSE LRPELVSARM PSSGNPSSSS  420
VGLIFSQSGS VSLADVQLSS QTSVPISNGR GTRQGGEVRR SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24932.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309682.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2P6PWH60.0A0A2P6PWH6_ROSCH; Putative transcription factor C3H family
STRINGXP_004309682.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-178C3H family protein