PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24976.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 173aa MW: 19765.4 Da PI: 9.239

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24976.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.3e-18	17	69	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q++ Le+ F +n+++ e++ LAk+lg++ rqV +W+qN+Ra++k mrna24976.1-v1.0-hybrid 17 KKRLTQDQVKLLERSFSSNNKLEPERKLLLAKQLGIPARQVAIWYQNKRARWK 69 5679************************************************9 PP
2	HD-ZIP_I/II	109.8	1.9e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +k+rl+++qvklLE+sF++++kLeperK la++Lg+ +rqva+W+qn+RAR+kt+ lE+ y+aL+ ++d+ +e++rLek+ve+L mrna24976.1-v1.0-hybrid 16 NKKRLTQDQVKLLERSFSSNNKLEPERKLLLAKQLGIPARQVAIWYQNKRARWKTQSLEVGYNALQMKLDTALAEKRRLEKDVERL 101 79************************************************************************************ PP HD-ZIP_I/II 88 reelke 93 + el++ mrna24976.1-v1.0-hybrid 102 KGELNR 107 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.758	11	71	IPR001356	Homeobox domain
SMART	SM00389	9.2E-14	13	75	IPR001356	Homeobox domain
CDD	cd00086	5.62E-13	17	72	No hit	No description
Pfam	PF00046	2.3E-15	17	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.09E-17	17	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-18	17	78	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDFFQPSSNN NRIHHNKKRL TQDQVKLLER SFSSNNKLEP ERKLLLAKQL GIPARQVAIW 60 YQNKRARWKT QSLEVGYNAL QMKLDTALAE KRRLEKDVER LKGELNRAHE LCLALNNQRQ 120 VSSGDNHPVV CSVFSSSCDQ EGAASSSLLG DHVVNREIRE YEDLYACLIG MQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24976.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457730.1	1e-126	PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A2P6QAG8	1e-103	A0A2P6QAG8_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_008365122.1	4e-80	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	8e-36	homeobox protein 52

Link Out ? help Back to Top
Phytozome	mrna24976.1-v1.0-hybrid