PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna25225.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 331aa MW: 37956.5 Da PI: 5.8016

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna25225.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	42	2.9e-13	86	131	2	48
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 ppG++F Ptdeel+ yLk+k+ +++l++ + i++ +iy+++P++L mrna25225.1-v1.0-hybrid 86 PPGYQFFPTDEELIISYLKRKILNQELPM-NRIRDENIYNYHPRTLA 131 9**************************.77************7 PP
2	NAM	49.2	1.7e-15	145	194	79	128
NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + gyWkat +d+++++++ge++g k L fy+g++ +g+kt+W mheyr+ mrna25225.1-v1.0-hybrid 145 QGGYWKATKRDETIKTQGGEEIGYKMHLDFYDGTHAQGTKTNWKMHEYRI 194 68**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-33	83	199	IPR003441	NAC domain
PROSITE profile	PS51005	25.628	85	219	IPR003441	NAC domain
Pfam	PF02365	3.1E-19	86	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEVELEVFVQ ASSLEPDMLS RSSRKFSSRH HRQSRRCSQG RAESGVEAVL ESKWKNGKRE 60 NKKNIFWEKS ETDFEGRVDD YFRSFPPGYQ FFPTDEELII SYLKRKILNQ ELPMNRIRDE 120 NIYNYHPRTL AGNESTPKDL SLIEQGGYWK ATKRDETIKT QGGEEIGYKM HLDFYDGTHA 180 QGTKTNWKMH EYRINEENGI SSRNNNNKGE GSSRRHEDQD QSRNASQFDY STLTNSCVGS 240 SSSNVWNQNS TDHYNTYSMQ MSHDPSSSQF FSSAFPLQSS TDQICTAGLE PVDDKISEVD 300 PSSIVLPAHV REYVQSIQLV KDEGDDHVAK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-22	84	208	16	153	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-22	84	208	16	153	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-22	84	208	16	153	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-22	84	208	16	153	NO APICAL MERISTEM PROTEIN
3swm_A	4e-22	84	208	19	156	NAC domain-containing protein 19
3swm_B	4e-22	84	208	19	156	NAC domain-containing protein 19
3swm_C	4e-22	84	208	19	156	NAC domain-containing protein 19
3swm_D	4e-22	84	208	19	156	NAC domain-containing protein 19
3swp_A	4e-22	84	208	19	156	NAC domain-containing protein 19
3swp_B	4e-22	84	208	19	156	NAC domain-containing protein 19
3swp_C	4e-22	84	208	19	156	NAC domain-containing protein 19
3swp_D	4e-22	84	208	19	156	NAC domain-containing protein 19
4dul_A	4e-22	84	208	16	153	NAC domain-containing protein 19
4dul_B	4e-22	84	208	16	153	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna25225.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P6RDY3	1e-91	A0A2P6RDY3_ROSCH; Putative transcription factor NAM family

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-23	NAC family protein

Link Out ? help Back to Top
Phytozome	mrna25225.1-v1.0-hybrid