PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25277.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 102aa    MW: 11717.3 Da    PI: 9.7296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25277.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081358244
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              rWT+   + + +a +++ ++   +W  +a+ +g ++t++++k ++
  mrna25277.1-v1.0-hybrid 13 SRWTPKQNKVFERALALYDKDtpdRWQNVAKAVGGNKTPEEVKRHY 58
                             59*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.76762IPR017877Myb-like domain
SMARTSM007174.4E-71164IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-121370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-41468IPR009057Homeodomain-like
CDDcd001674.03E-51458No hitNo description
PfamPF002492.4E-61458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASSSLKRQD SNSRWTPKQN KVFERALALY DKDTPDRWQN VAKAVGGNKT PEEVKRHYDI  60
LLEDLRQIES GQVPIPNYKS LGITTTKVDE EERLLKYLKL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-311101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25277.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292033.11e-69PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6PP973e-53A0A2P6PP97_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004292033.15e-69(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-37RAD-like 6