PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25284.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 273aa    MW: 32062.7 Da    PI: 7.5999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25284.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.63.3e-42231531128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 
                              lppG+rF Ptd el+ +yL+kk+ +++ +l + i+e+diy ++P+ L  + + + +e+ewyfF++r++ky +g+r+nr+ +  +g+
  mrna25284.1-v1.0-hybrid  23 LPPGYRFAPTDAELIIYYLQKKILKQEPPL-NKIREIDIYLYHPQYLAeTqSNRDGEREWYFFTPRERKYLHGSRPNRTQRsgNGF 107
                              79*************************999.78**************83323344777********************76645899 PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wk tgkd+ ++s+ ge +g k+tL +++g++++ +kt+W mheyrl
  mrna25284.1-v1.0-hybrid 108 WKVTGKDEVITSAAGERIGFKNTLDYFEGTHSENQKTKWKMHEYRL 153
                              ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-4718187IPR003441NAC domain
PROSITE profilePS5100546.96323187IPR003441NAC domain
PfamPF023653.8E-2424153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESNYQEAPT FFEDPVDVYF HFLPPGYRFA PTDAELIIYY LQKKILKQEP PLNKIREIDI  60
YLYHPQYLAE TQSNRDGERE WYFFTPRERK YLHGSRPNRT QRSGNGFWKV TGKDEVITSA  120
AGERIGFKNT LDYFEGTHSE NQKTKWKMHE YRLKKSERDE EIAPSNNEKA QRDMKLDDCV  180
LCKIYTSNRC KVGKIIKRSK STSAKRSFNS DPNRDVQHEY QDQDCGAHPS GPVNNFSNQT  240
NTYDIMLSSL EEEVRAFDHW LANETATKKR IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-402318517163NO APICAL MERISTEM PROTEIN
1ut4_B6e-402318517163NO APICAL MERISTEM PROTEIN
1ut7_A6e-402318517163NO APICAL MERISTEM PROTEIN
1ut7_B6e-402318517163NO APICAL MERISTEM PROTEIN
4dul_A6e-402318517163NAC domain-containing protein 19
4dul_B6e-402318517163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25284.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468075.10.0PREDICTED: NAC domain-containing protein 55-like
TrEMBLA0A2P6RDY31e-124A0A2P6RDY3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15078714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-41NAC domain containing protein 47