PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25522.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 188aa    MW: 21230.2 Da    PI: 10.3005
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25522.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.69.9e-1438100271
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                              fY++YAke+ F+v+ s ++k+  ng i+++++vCskeg+++ + kk     r+r++tr +Cka++ v ++
  mrna25522.1-v1.0-hybrid  38 FYKSYAKEARFNVKSSVTEKK--NGVIVRKEYVCSKEGTSKVTGKK-----RNRNQTRENCKARIAVVRR 100
                              *************99987776..*****************998888.....99************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-938100IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDSQQSFDDT PIYCPQVKVD LIPIKNQEFQ TLQDVETFYK SYAKEARFNV KSSVTEKKNG  60
VIVRKEYVCS KEGTSKVTGK KRNRNQTREN CKARIAVVRR AKIVRAKGCE KRLKAGKEKG  120
RLKAAKKANG KGRFCHGCKK HDQQHDKRNC PKLKNKDGIL IAQTGEDTSD LSTDEEEYSS  180
RGVDQSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25522.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6QU819e-51A0A2P6QU81_ROSCH; Putative transcription factor FAR family
STRINGXP_004292126.13e-64(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-06FAR1-related sequence 5