PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25541.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 214aa    MW: 23577.6 Da    PI: 8.6064
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25541.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23e-292102196
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ +l++++a++e++r+++++sl++eA  r+ +Pv+Ga+g++l
  mrna25541.1-v1.0-hybrid   2 SCNGCRVLRKGCSENCMLRQCIewmedPQAQAHATVFVAKFFGRAGLLSFINAVSETQRPALFQSLLFEAVGRTINPVNGATGLLL 87 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelal 96 
                              +++++++q+++e ++
  mrna25541.1-v1.0-hybrid  88 AGNWKVCQAAVERVM 102
                              **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.571107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCMLR QCIEWMEDPQ AQAHATVFVA KFFGRAGLLS FINAVSETQR  60
PALFQSLLFE AVGRTINPVN GATGLLLAGN WKVCQAAVER VMSGGALEPL PEYSRRGVHH  120
VKQQRREERY FSKYSNKRRP ALLASGHVGD DERPDLDLSL KASSELRRHD HDRAATPSSV  180
EGSETSTFSR SGSSSADYTT NDLEGTKLLR LFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25541.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289796.11e-158PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN235e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2P6PLE01e-124A0A2P6PLE0_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004289796.11e-158(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-64LOB domain-containing protein 38