PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25669.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25400.8 Da    PI: 9.0107
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25669.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.4e-211060151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ie+ s rqvtfskRrng++ KA+  Sv  daevavi+fs+tgkly +ss
  mrna25669.1-v1.0-hybrid 10 KKIEDLSARQVTFSKRRNGLFRKAKRWSVSYDAEVAVIVFSNTGKLYQFSS 60
                             68***********************************************96 PP
2K-box45.82.5e-16951642089
                    K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                  L+++i +L++   ++ G +L+ LslkeL +Le++L++++ +i ++K+e+lle    ++ ke+++ e
  mrna25669.1-v1.0-hybrid  95 ATVLLQEQIASLKSDCSRMRGRELDGLSLKELDELEKELNQGILSITKRKDEVLLEDFYSSKSKEEQIME 164
                              445699***********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-22261IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-18424IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.436562IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-23573IPR002100Transcription factor, MADS-box
PfamPF003195.1E-201158IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-182439IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-183960IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.11689177IPR002487Transcription factor, K-box
PfamPF014865.3E-1098164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGPPRRTEIK KIEDLSARQV TFSKRRNGLF RKAKRWSVSY DAEVAVIVFS NTGKLYQFSS  60
TSMEHTLLRY NNKGVSSPDE KRQHEAAAKP ETLNATVLLQ EQIASLKSDC SRMRGRELDG  120
LSLKELDELE KELNQGILSI TKRKDEVLLE DFYSSKSKEE QIMEILSANN YRKPSSVLEL  180
FSDSLLPLDR SRLFYASSSN DIASCSESAG SGKHKDLSLQ LSLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14591492MEF2C
5f28_B1e-14591492MEF2C
5f28_C1e-14591492MEF2C
5f28_D1e-14591492MEF2C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12334KRRNGLFRKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25669.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301484.11e-163PREDICTED: agamous-like MADS-box protein AGL18
STRINGXP_004301484.11e-162(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-27AGAMOUS-like 18