PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25783.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 181aa    MW: 21034.9 Da    PI: 8.7769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25783.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.54.8e-31181591128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgk.....rknra. 77 
                              lp+GfrF Ptdeelv +yL +k+  + ++++++i+e+d    y+ +P++L  +++++e+ew+fF+++d ++ +g+     +++r  
  mrna25783.1-v1.0-hybrid  18 LPVGFRFMPTDEELVRYYLMNKACFRAVPVADAIQEIDatrFYSNHPKNLV-TFSNGEREWFFFIHEDDENYSGScrshaQRRRNv 102
                              79*************************999998888874447889*****6.788899******9998887755533333222333 PP

                      NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                     g+Wk +g++++++sk+g++  +k  L++++g  +++k+++t+W m ey+l
  mrna25783.1-v1.0-hybrid 103 revgNGLGFWKPSGSENPIYSKDGNVFATKIFLTYFSGscHSKKPKRTHWKMVEYHL 159
                              333333799***************************7755789999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-2814163IPR003441NAC domain
PROSITE profilePS5100529.80518174IPR003441NAC domain
PfamPF023651.6E-1719159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEAQKGEGEV VMSSDLLLPV GFRFMPTDEE LVRYYLMNKA CFRAVPVADA IQEIDATRFY  60
SNHPKNLVTF SNGEREWFFF IHEDDENYSG SCRSHAQRRR NVREVGNGLG FWKPSGSENP  120
IYSKDGNVFA TKIFLTYFSG SCHSKKPKRT HWKMVEYHLQ IRREWVVLGK LQRVMDYTGF  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-171415911140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25783.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464328.11e-135PREDICTED: protein ATAF2-like
TrEMBLA0A2P6QSM81e-108A0A2P6QSM8_ROSCH; Putative transcription factor NAM family
STRINGXP_004301123.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-19NAC-domain protein 101