PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25794.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 188aa    MW: 21749.6 Da    PI: 8.3113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25794.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.8e-29181661128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpk......kvkaeekewyfFskrdkkyatgk..... 72 
                              lp+GfrF Ptdeelv +yL +k+  + ++++++i+e+d    y+ +P++L        +++++e+ew+fF+++d ++ +g+     
  mrna25794.1-v1.0-hybrid  18 LPVGFRFMPTDEELVRYYLMNKACFRAVPVADAIQEIDatrFYSNHPKNLAFyfnnavTFSNGEREWFFFIHEDDENYSGSccsha 103
                              79*************************999998888874447889*****854677766667999*****9998887755544443 PP

                      NAM  73 rknratk.....sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                              +++r ++      g+Wk +g++++++sk+g++  +k  L++++g  +++k+++t+W + ey+l
  mrna25794.1-v1.0-hybrid 104 QRRRNVRevgngIGFWKPSGSENPIYSKDGNVFATKIFLTYFSGscHSKKPKRTHWKIVEYHL 166
                              333332223344799***************************7755789999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-2514170IPR003441NAC domain
PROSITE profilePS5100528.76118181IPR003441NAC domain
PfamPF023653.8E-1619166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEAQKGEGEV VMSSDLLLPV GFRFMPTDEE LVRYYLMNKA CFRAVPVADA IQEIDATRFY  60
SNHPKNLAFY FNNAVTFSNG EREWFFFIHE DDENYSGSCC SHAQRRRNVR EVGNGIGFWK  120
PSGSENPIYS KDGNVFATKI FLTYFSGSCH SKKPKRTHWK IVEYHLQIRR EWVVLGKLQR  180
GMDYTGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-151316610140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25794.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464326.11e-133PREDICTED: protein ATAF2-like
TrEMBLA0A2P6QSM81e-105A0A2P6QSM8_ROSCH; Putative transcription factor NAM family
STRINGXP_004301123.11e-140(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.18e-19NAC domain containing protein 102