PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25833.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 908aa    MW: 100635 Da    PI: 8.0351
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25833.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.41.6e-152673071656
                              HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  mrna25833.1-v1.0-hybrid 267 KKLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 307
                              689**********************************9877 PP
2START231.22.8e-724216442206
                              HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                    START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla 77 
                              + ++a++el+k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ +l++lv++++d++ qW+e+++
  mrna25833.1-v1.0-hybrid 421 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPatgrpkRSIEASRETGVVFVDLPKLVQSFMDVN-QWKEMFP 505
                              56789***********************************8755599*******************************.******* PP

                              ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                    START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                                  ka+t++vi++g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w++vdvS+d  +++  ++s+v+++++pSg+
  mrna25833.1-v1.0-hybrid 506 siisKAATVDVINNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCSKQLSAEQWAVVDVSIDKVEDNI-DASLVKCRKRPSGC 590
                              *********************************************************************98.9************* PP

                              EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +ie+ksngh+kv+wveh ++++++++ ++rs+v+sgla+ga++wvatlq qce+
  mrna25833.1-v1.0-hybrid 591 IIEDKSNGHCKVIWVEHLECQKSTVQTMYRSIVNSGLAFGARHWVATLQLQCER 644
                              ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-14256314IPR009057Homeodomain-like
SMARTSM003892.1E-9260313IPR001356Homeobox domain
PROSITE profilePS5007114.722267309IPR001356Homeobox domain
PfamPF000466.7E-13267307IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-13268307IPR009057Homeodomain-like
CDDcd000861.61E-12270307No hitNo description
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
PROSITE profilePS5084839.771411647IPR002913START domain
SuperFamilySSF559611.35E-34413644No hitNo description
CDDcd088756.75E-111415643No hitNo description
Gene3DG3DSA:3.30.530.203.2E-5417636IPR023393START-like domain
SMARTSM002345.4E-73420644IPR002913START domain
PfamPF018521.8E-58421644IPR002913START domain
SuperFamilySSF559611.37E-14674894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MTSLSHQSST PTLDRSSTRR RLCRCLKHVP ELAGDFVGVG CEQSSPIYAT TPQPPWTVDS  60
EVAVCSDSVY GRQRTVDSEV PRKDRIKERK IIRPSLSTRS AGVGRKNRVG STGRQRVRLG  120
LGFLSGRKRD DGLLVMMVML YYSVISLNIT HAPRLIAMGV VDMSNNPPTS RTKDFFASPA  180
LSLSLAGIFR DAGTPAETAA NREGDEGDEG SVGGRRRSRE DTAEISSENS GPARSRSAED  240
IDFDAELGEQ DEDDGDGDNK NKKKKRKKLF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ  300
NRRTQIKAIQ ERHENSLLKG EMEKLRDENK AMREQINKSC CPNCGSATTS RDATLTTEEQ  360
QLRIENARLK SEVEKLRAAL VKYPLGTSSP SSSTGQDQEN RSSLDFYTGI FGLEKSRIME  420
IVNQAMEELQ KMATAGEPLW VRSVETGREI LNYDEYIKEF NIEVPATGRP KRSIEASRET  480
GVVFVDLPKL VQSFMDVNQW KEMFPSIISK AATVDVINNG EGDNRNGAVQ LMFAELQMLT  540
PLVPTREVYF VRCSKQLSAE QWAVVDVSID KVEDNIDASL VKCRKRPSGC IIEDKSNGHC  600
KVIWVEHLEC QKSTVQTMYR SIVNSGLAFG ARHWVATLQL QCERLVFFMA TNVPMKDSTG  660
VATLAGRKSI LKMAQRMTSS FCRAIGASSY HTWTKITSKT GDDIRIASRK NLNDPGEPIG  720
VILCAVSSVW LPVSPFTLFD FLRDETRRNE WDIMLNGGPA QTIANLSKGQ DRGNAVTIQT  780
MKSKENSMWI LQDSCINAYE SMVVYAPVDI TGMQSVMTGC DSSNMAVLSS GFSILPDGLE  840
SRPMVITSRQ EDRGSDSEGG TLLTVAFQVL TNTSPTAKLT MESVESANTL ISCTLRNIKT  900
SLQCEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266KKKKRK
2261267KKKKRKK
3261268KKKKRKKL
4263267KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25833.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302894.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2 isoform X2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H4Z0B20.0A0A2H4Z0B2_9ROSA; Glabra 2
STRINGXP_004302894.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]