PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25942.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36838.5 Da    PI: 4.4901
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25942.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1991144356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNrRa++k
  mrna25942.1-v1.0-hybrid  91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 144
                              56689************************************************9 PP
2HD-ZIP_I/II128.33.2e-4191180291
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkrrl+++qv++LE+sF+ e+kLeperK  la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L
  mrna25942.1-v1.0-hybrid  91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYNSLKADCDSLCKENDKL 176
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reel 91 
                              ++e+
  mrna25942.1-v1.0-hybrid 177 KAEV 180
                              *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1978148IPR009057Homeodomain-like
PROSITE profilePS5007116.63386146IPR001356Homeobox domain
SMARTSM003891.9E-1888150IPR001356Homeobox domain
CDDcd000865.77E-1789147No hitNo description
PfamPF000463.0E-1691144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2093154IPR009057Homeodomain-like
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PfamPF021838.8E-16146188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGGGRVYNS SGGASFLLRN QRGSSASEPL DSLFLSGSSN ASSTSPFLGS SMVSFEDVRG  60
GNGLKRSMFH QYEHEDNCDE EFDDYFHQPG KKRRLTADQV QFLEKSFDLE NKLEPERKIL  120
LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQANYN SLKADCDSLC KENDKLKAEV  180
LLLSERLQLK DKERANSEQS DTNKSHQEPQ QMPIAESVSS EGEVSKLSVV ACKEDLSSVK  240
SDIFDSDSPH YTDGVHSSLL ERGDSSYIFE PDQSDLSQDE EDNLSKSLLP TYIFPKLEDV  300
DYTDPPANSC NFGFPVEDQA FWSWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25942.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299399.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2P6P2E70.0A0A2P6P2E7_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004299399.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-45homeobox 1