PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25973.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 183aa    MW: 20271.5 Da    PI: 5.4195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25973.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-0919601454
                             HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             d+iN+   +L++llP+ + + +s K+s +++L+++++YI++L
  mrna25973.1-v1.0-hybrid 19 DQINDLVTKLQQLLPEiRNSRRSDKVSASTVLQETCNYIRNL 60
                             79**************999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.452560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-61960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-61964No hitNo description
SuperFamilySSF474592.36E-91978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSTRRSRSRQ SGGSRISDDQ INDLVTKLQQ LLPEIRNSRR SDKVSASTVL QETCNYIRNL  60
HREVDDLSER LSELLATTDT AQAAGGDSRG TDEGGGDSNL ANSEAETPGK EKMKMDCTEG  120
EVRTSVRVFC RFSTIPAPAM PFLFPGVIPD LPRRCWNEEE GRRDHDRRST MIGREVLSEI  180
AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25973.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.14e-32activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1