PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26118.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24113.1 Da    PI: 9.3984
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26118.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.8e-21942134
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                             krienk+nrqvtf+kRrng+lKKA+ELSvLCdae
  mrna26118.1-v1.0-hybrid  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE 42
                             79******************************98 PP
2K-box100.91.8e-334112714100
                    K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              ae+++qe+ +Lk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++++l+++++lq++e++l e+nk+Lr+kle
  mrna26118.1-v1.0-hybrid  41 AENSYQEYLRLKARVEVLQRSQRNLLGEDLGPLNTKELEQLEHQLESSLKHIRSTKTQFMLDELSDLQNREQMLVETNKSLRRKLE 126
                              5899********************************************************************************98 PP

                    K-box 100 e 100
                              e
  mrna26118.1-v1.0-hybrid 127 E 127
                              7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.02142IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-22151IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-20142IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-192338IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.0741131IPR002487Transcription factor, K-box
PfamPF014861.0E-2841125IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AENSYQEYLR LKARVEVLQR  60
SQRNLLGEDL GPLNTKELEQ LEHQLESSLK HIRSTKTQFM LDELSDLQNR EQMLVETNKS  120
LRRKLEETNL QGAPLHLAWD GGYGQNNIHE HNSRFPPQSQ GFFQQLQGNN NSAMQMGYTP  180
LGSDHHHHQQ MNAGNPGQNV NGFIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-334312519101Developmental protein SEPALLATA 3
4ox0_B6e-334312519101Developmental protein SEPALLATA 3
4ox0_C6e-334312519101Developmental protein SEPALLATA 3
4ox0_D6e-334312519101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26118.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299281.11e-145PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR22e-83MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2P6P3591e-131A0A2P6P359_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299281.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]