PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26330.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 237aa    MW: 26519.7 Da    PI: 5.0494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26330.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.78e-387104197
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i++lqq
  mrna26330.1-v1.0-hybrid   7 SCGACKFLRRKCTSECVFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEALARMRDPIYGCVSQIFALQQ 92 
                              6************************9789********************************************************* PP

                   DUF260  86 qleqlkaelall 97 
                              q++ l++e+++l
  mrna26330.1-v1.0-hybrid  93 QVAYLQEEIETL 104
                              ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8286108IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-367103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQH  60
RSDAALTMSY EALARMRDPI YGCVSQIFAL QQQVAYLQEE IETLLQNQMV SLVSANSSAC  120
GSSEGNSNSN TFRGLQVFPA QQYDIAVDRQ KFQNQPEPPI LLPQVGVAST NQGFSSHDHQ  180
MDIQMPTLYE WEEVKTFGDR STQDSLEKFL EDIDQENLGH NPWLNDPSIA WNWKRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3331037106LOB family transfactor Ramosa2.1
5ly0_B1e-3331037106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26330.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308845.11e-179PREDICTED: LOB domain-containing protein 29
TrEMBLA0A498KMD21e-100A0A498KMD2_MALDO; Uncharacterized protein
STRINGXP_004308845.11e-179(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-54LOB domain-containing protein 33