PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26513.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 100aa    MW: 11626.4 Da    PI: 9.2686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26513.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-18956148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd +l ++v+++G g W+ I++  g++R++k+c++rw++yl
  mrna26513.1-v1.0-hybrid  9 KGAWTREEDNILRQCVAKHGEGKWHQIPAAAGLKRCRKSCRLRWLNYL 56
                             79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.056160IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-24458IPR009057Homeodomain-like
SMARTSM007172.2E-15858IPR001005SANT/Myb domain
PfamPF002494.4E-17956IPR001005SANT/Myb domain
SuperFamilySSF466892.16E-221084IPR009057Homeodomain-like
CDDcd001674.80E-111156No hitNo description
Gene3DG3DSA:1.10.10.601.9E-65983IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEEQTGLRKG AWTREEDNIL RQCVAKHGEG KWHQIPAAAG LKRCRKSCRL RWLNYLKPDI  60
KRGDFEDAEV DLIIRLHKLL GNRQAETLYI YAQILHNTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-13786583B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26513.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288854.17e-56PREDICTED: transcription factor MYB114-like
RefseqXP_011458805.17e-56PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV97e-37MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2P6PGM27e-42A0A2P6PGM2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004288854.13e-55(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-39myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]