PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26708.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 218aa    MW: 24809.7 Da    PI: 10.7823
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26708.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.34.7e-101160450
                  G2-like  4 lrWtpeLHerFveaveqLGGsek.AtPkti.lelm.kvkgLtlehvkSHL 50
                              +Wt e H+ Fv++v +LGG +k  tP+++ +e+m +vkgL+   +  H+
  mrna26708.1-v1.0-hybrid 11 TEWTLEHHKTFVDVVIRLGGFNKiGTPRSVvVEMMnNVKGLSQRTLVHHM 60
                             58******************98857**99725777569****99998887 PP
2G2-like431e-13107155550
                  G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkv...kgLtlehvkSHL 50 
                               Wt e H+r veav++LGG  kAtP ++l+lm+    +gLt+  ++ HL
  mrna26708.1-v1.0-hybrid 107 SWTVEHHKRVVEAVTKLGGLSKATPTAVLRLMDEerrQGLTVRILRRHL 155
                              6*******************************9633369***9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-6759IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-10107156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-7107154IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDVNGDRQES TEWTLEHHKT FVDVVIRLGG FNKIGTPRSV VVEMMNNVKG LSQRTLVHHM  60
VLFQLLNKRT HLSLGRRSQL ACSDPYQSLV NDFEGLQVAT PKRLLSSWTV EHHKRVVEAV  120
TKLGGLSKAT PTAVLRLMDE ERRQGLTVRI LRRHLLGLRY LQKKTQKTIH ESSQGKAWIN  180
RKKNFEEAVG DTLILINFSS CKIANGYSPA NDYRIIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26708.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1760367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.18e-10G2-like family protein