PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26712.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 225aa    MW: 25575.9 Da    PI: 11.3587
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26712.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.66.4e-09113166550
                  G2-like   5 rWtpeLHerFveaveqLGGsekAtP..k...tilelmkv...kgLtlehvkSHL 50 
                               Wt e H+r v+av++ GG + A P  k   ++l+lm+    +gLt+  v  HL
  mrna26712.1-v1.0-hybrid 113 TWTLEHHKRVVDAVAKVGGLDMASPieKtavRVLRLMDEerrQGLTVRMVTKHL 166
                              6**********************995523336999998633369*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-7112167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVQVGVMENH KKVPQTTEWT LEHHKLFVDL LLQSRGFEKV RAFIVRKMMK TVKGLTWSAA  60
LGHSRHLESL QRQTQSALAR RPPRKSSSDL RVLVEDLVRG MEGLTMERNK LSTWTLEHHK  120
RVVDAVAKVG GLDMASPIEK TAVRVLRLMD EERRQGLTVR MVTKHLIGLR FLQKRTQEAI  180
DKAAGNKARQ GCSVKRSNKV KLGRIENNNG KKECHGLSDR MIMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26712.1-v1.0-hybrid
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3264722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-07G2-like family protein