PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26819.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 481aa    MW: 53054.5 Da    PI: 9.7786
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26819.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32162218158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  mrna26819.1-v1.0-hybrid 162 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 218
                              69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-37160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.482161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-26163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MPAKSKDEDP KLKPGVQIVL QSTIQPWWHG VGNSFSFGES AVASSLAERG NSVVMNGAMQ  60
SHSSNFNKDV QTTIGSQSDG NSGRENQQMK STSSASAAKL GEHLDANSQM ELVGHSIVLT  120
SYPYPDPQYG GMLTHYGPRA MVPPQFYGLH HGRMPLPLEM EEEPVYVNAK QYHGILRRRQ  180
SRAKAELERK LIKVRKPYLH ESRHQHALRR ARGCGGRFLN TKKQDGSDAN SSLEKSINLD  240
ANFSPKSAKS GFECFPNDSN GNFVSSNVQQ EGSGSWFRTL NNHTLTHGNG NGHGPSSAYR  300
TTFGNGTKGV FLGEQKETMQ GLAYLAGVAE GVHFPAWKNP SCAMSKSGNS FLALAVYVEI  360
VMGTWPIVHS LSLISRSEFG EPYFGFEVRI EPFRASTIEA SKLLAHQSSV WQITGRKSEE  420
DRDKFGREIW VTDEWFRGHC KKTPWKLLVP GIGGVFSVSS AWNAFRTVQH TTFQRHGFGS  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20162225265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26819.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468828.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_011468829.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A2P6S7K80.0A0A2P6S7K8_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004306538.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-36nuclear factor Y, subunit A1