PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna27383.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CO-like

Protein Properties

Length: 357aa MW: 38994 Da PI: 5.7231

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna27383.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.7e-07	15	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+++++ ++ fC+ ++ +lC C +++H H+ mrna27383.1-v1.0-hybrid 15 KPCDTCKSSPAAVFCRADSAYLCLACDSKIHCAnklasrHQ 55 68****************************95545666666 PP
2	zf-B_box	24.3	6.5e-08	56	99	2	39
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + ++C+ +e+ ++ C+ + lC +C +H+ H++ mrna27383.1-v1.0-hybrid 56 RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHER 99 5789*****************************65777777775 PP
3	CCT	70.4	4.6e-24	283	327	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RY+eKrk+R F+K+irY+sRKa+Ae+RpR+KGrF+k++e mrna27383.1-v1.0-hybrid 283 REARVMRYREKRKNRTFQKTIRYASRKAYAETRPRIKGRFAKRSE 327 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.2E-12	12	59	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.338	12	59	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.4E-5	15	55	IPR000315	B-box-type zinc finger
CDD	cd00021	5.76E-9	16	59	No hit	No description
PROSITE profile	PS50119	10.608	55	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.2E-6	56	101	IPR000315	B-box-type zinc finger
CDD	cd00021	1.09E-8	58	102	No hit	No description
SMART	SM00336	4.9E-10	60	102	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.638	283	325	IPR010402	CCT domain
Pfam	PF06203	2.1E-18	283	325	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGIQSCWTLP GLSPKPCDTC KSSPAAVFCR ADSAYLCLAC DSKIHCANKL ASRHQRVWMC 60 EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERF PVEPFLDSAE SIAKSTSSAF 120 NDAVSTIKND DADSLLIPNL NFTSKFVDAL DMKPDMYFPE MESLLEFDYP NPIQNSSLGM 180 DSVVPVQPDP IPPAPVLHQP SQESCFDIDF CRSKLSSSFS YPAQSISQSV SSSSLDVGVV 240 PDGNSFSDIS YPFIANVNQN GMDSGVPAPA TVSQATQLTG VDREARVMRY REKRKNRTFQ 300 KTIRYASRKA YAETRPRIKG RFAKRSESET EVMDRIFNSA PGSYIADAQY GVVPTF*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGIQSCWTLP GLSPKPCDTC KSSPAAVFCR ADSAYLCLAC DSKIHCANKL ASRHQRVWMC  60
EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERF PVEPFLDSAE SIAKSTSSAF  120
NDAVSTIKND DADSLLIPNL NFTSKFVDAL DMKPDMYFPE MESLLEFDYP NPIQNSSLGM  180
DSVVPVQPDP IPPAPVLHQP SQESCFDIDF CRSKLSSSFS YPAQSISQSV SSSSLDVGVV  240
PDGNSFSDIS YPFIANVNQN GMDSGVPAPA TVSQATQLTG VDREARVMRY REKRKNRTFQ  300
KTIRYASRKA YAETRPRIKG RFAKRSESET EVMDRIFNSA PGSYIADAQY GVVPTF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna27383.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB926503	7e-66	AB926503.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-233_09.
GenBank	AB926508	7e-66	AB926508.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-245_09.
GenBank	AB926509	7e-66	AB926509.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-253_09.
GenBank	AB926510	7e-66	AB926510.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-317_09.
GenBank	AB926514	7e-66	AB926514.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-321_09.
GenBank	AB926515	7e-66	AB926515.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-323_09.
GenBank	AB926516	7e-66	AB926516.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-328_09.
GenBank	AB926517	7e-66	AB926517.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gYK-329_09.
GenBank	AB926541	7e-66	AB926541.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: gTN-01_09.
GenBank	AB931175	7e-66	AB931175.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab1-45_09.
GenBank	AB931178	7e-66	AB931178.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab1-54_09.
GenBank	AB931179	7e-66	AB931179.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab1-55_09.
GenBank	AB931180	7e-66	AB931180.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab1-56_09.
GenBank	AB931181	7e-66	AB931181.1 Rubus grayanus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab1-57_09.
GenBank	AB931183	7e-66	AB931183.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab2-70_09.
GenBank	AB931184	7e-66	AB931184.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: ab2-72_09.
GenBank	AB931232	7e-66	AB931232.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-310_09.
GenBank	AB931233	7e-66	AB931233.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-311_09.
GenBank	AB931235	7e-66	AB931235.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-314_09.
GenBank	AB931241	7e-66	AB931241.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-296_09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462636.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-107	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A2P6QTN4	0.0	A0A2P6QTN4_ROSCH; Putative transcription factor C2C2-CO-like family
STRING	EMJ24298	1e-143	(Prunus persica)
STRING	XP_004507812.1	1e-143	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-99	CONSTANS-like 5

Link Out ? help Back to Top
Phytozome	mrna27383.1-v1.0-hybrid

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]