PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27793.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 201aa    MW: 23359.6 Da    PI: 10.7561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27793.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.95.3e-16153196246
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwd 46 
                              + GfrFhPtdeelv +yLk+kv +k++++ ++i++vdiyk+ePwd
  mrna27793.1-v1.0-hybrid 153 ALGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISDVDIYKSEPWD 196
                              67**************************9.89************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-15150196IPR003441NAC domain
PROSITE profilePS5100518.444152200IPR003441NAC domain
PfamPF023655.3E-7155188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRRGPSGAT RKEKERERKR RVVRGGRDIV VGCVVRSSRA RTGAWWRCLL TFGDDNPDAL  60
LLPALFVLWR SRPLVWIWGP RGWRWSCGVG DHTESLTEWQ FCNFRSSQLS SDFTNRHRHR  120
HHCRRFNFTD GSRASPVDYH TPAPKTPAPT ALALGFRFHP TDEELVIYYL KRKVCRKPFK  180
FNAISDVDIY KSEPWDRACE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11120KEKERERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27793.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.19e-20NAC domain containing protein 2