PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28067.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 266aa    MW: 29908.2 Da    PI: 4.8333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28067.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19100149255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +grW+AeIrdp++   rkr +lg+f taeeAa  +++a+ kl+g
  mrna28067.1-v1.0-hybrid 100 HFRGVRQRP-WGRWAAEIRDPVQ---RKRLWLGTFNTAEEAAIIYDRAAVKLRG 149
                              79*******.**********755...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.5E-691264IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.16E-3499159No hitNo description
Gene3DG3DSA:3.30.730.101.6E-30100158IPR001471AP2/ERF domain
PROSITE profilePS5103223.775100157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23100159IPR016177DNA-binding domain
PfamPF008473.9E-12100149IPR001471AP2/ERF domain
SMARTSM003801.3E-38100163IPR001471AP2/ERF domain
PRINTSPR003678.6E-10101112IPR001471AP2/ERF domain
PRINTSPR003678.6E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAKFSEHVIS VSKFIQENTH LEKTRLLQKR VRIILTDPDA TDSDSDDDER SSSAVRRVKR  60
HVKEISFEPA SSSFKLPKRE IPETRPDPKS PDSDPARKKH FRGVRQRPWG RWAAEIRDPV  120
QRKRLWLGTF NTAEEAAIIY DRAAVKLRGP DAVTNFPNSV TTEVETVVAE EVPTAHEEEG  180
SFGSTATCDS LSNEEPALSP TSVLRYDDPA PFGGFRYCGD VHDFGFEYDV PSLNLPDIMV  240
PANNNFNHDE FGEFDVNDFL VDVIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2396162168ATERF1
3gcc_A5e-2396162168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28067.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294718.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A3S8T9350.0A0A3S8T935_FRAAN; Transcription factor ERF50
STRINGXP_004294718.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-36cytokinin response factor 4