PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28322.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 881aa    MW: 97666.3 Da    PI: 6.9268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28322.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-1893145456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  mrna28322.1-v1.0-hybrid  93 KKRLNLEQVKTLEKSFEMGNKLEPERKLQLAKALGLQPRQVAIWFQNRRARWK 145
                              4568889*********************************************9 PP
2HD-ZIP_I/II128.23.5e-4191181191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekk+rl+ eqvk+LE+sFe+ +kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n++L++++++
  mrna28322.1-v1.0-hybrid  91 EKKKRLNLEQVKTLEKSFEMGNKLEPERKLQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKKKFDALKADNDALQSHNKK 176
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L++el
  mrna28322.1-v1.0-hybrid 177 LQSEL 181
                              **998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.7E-1890151IPR001356Homeobox domain
SuperFamilySSF466891.37E-1890149IPR009057Homeodomain-like
PROSITE profilePS5007116.63391147IPR001356Homeobox domain
CDDcd000864.06E-1792148No hitNo description
PfamPF000464.9E-1593145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1895155IPR009057Homeodomain-like
PRINTSPR000317.9E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000317.9E-5127143IPR000047Helix-turn-helix motif
PfamPF021838.0E-14147186IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:2.60.120.2006.4E-8448485IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561126.32E-68456755IPR011009Protein kinase-like domain
PROSITE profilePS5001126.69471740IPR000719Protein kinase domain
PfamPF077142.6E-31475734IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001070477509IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.204.6E-20486543No hitNo description
Gene3DG3DSA:1.10.510.103.5E-32544734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAFPPCHSFM FQTHEDPDLH LSAASSSLNN LPSCPPQHFH GGGGGIPFMM KRSLSFSGDD  60
KCNHHHYDHQ DLHGGGDQDD LSDDGSQLIG EKKKRLNLEQ VKTLEKSFEM GNKLEPERKL  120
QLAKALGLQP RQVAIWFQNR RARWKTKQLE KDYDVLKKKF DALKADNDAL QSHNKKLQSE  180
LLAIKGSKDS NFEGGLSNNM KKETDQGSWS NGSTDDNSSD HINLDMSRST TPAATSPQSN  240
TQITNGSKNL FPSSLCRPPH ASITQLLQGS SRSSDLHCLK VDQMIQDDQT FCTMFNNGSI  300
DQDHQEESEE LLRSGFTRRR SCNVEECQVG GSQYGNVGGG IASLPGSENM GVGVEALQVG  360
SWNKGKSKGK HKIEEGDEIK GCWMKFRFMG RCLSPKTKMD NSTSGTSTQY EDSKSTNDTI  420
YNHAVAPGAL SSTTSNTESA LSTPKAPEEL IVASQLRRFT FNELKSAAKN FRPENLLGEG  480
GFGCVYKGWI SETGTSPTKP GIGLPVAVKT LNHDGLQGHK EWMAEVIYLG ELLHPNLVKL  540
VGYGIEDDKR LLVYEFMPRG SLENHLFRRN LPLPWSIRMK IALGAAKGLA YLHEESERPD  600
YNAKLSDFGL AKDGPEGEKT HVSTRVMGTY GYAAPEYVMT GHLTSKSDVY SFGVVLLELL  660
IGRRSMDKNR PQGEHNLVEW ARPHLGDRRR YYRLIDPRLE GRFSIKGAEM AFQLAAHCLS  720
RNPKARPLMS EVVQVIKPLL HLKDQAYSSS HPQGMHTERP GSSPNFRNGL WVPARNGQPS  780
RSQSLPNGPN VSPYHLSHPH RSLPNGPNVG DHMSIRCLYL EDVPNLDTAV VGEGYEICCH  840
HCLESDHGHP KGSWAEFAYK LSNDEECSDE DSESESDVEP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_A1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5t_D1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5t_I1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5t_J1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5t_M1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5u_C1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j5v_C1e-1233897661387Probable serine/threonine-protein kinase PBL2
6j6i_A1e-1233897661387Probable serine/threonine-protein kinase PBL2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28322.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297955.10.0PREDICTED: probable receptor-like protein kinase At5g15080 isoform X3
SwissprotQ9LFP70.0PIX7_ARATH; Probable serine/threonine-protein kinase PIX7
TrEMBLA0A2P6S4R90.0A0A2P6S4R9_ROSCH; Uncharacterized protein
STRINGXP_004297955.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-60homeobox 3
Publications ? help Back to Top
  1. Guy E, et al.
    xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.
    PLoS ONE, 2013. 8(8): p. e73469
    [PMID:23951354]