PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28394.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 311aa    MW: 35289.1 Da    PI: 4.5918
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28394.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2067120356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  mrna28394.1-v1.0-hybrid  67 KKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 120
                              56789************************************************9 PP
2HD-ZIP_I/II134.83.1e-4366157192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl++eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+++
  mrna28394.1-v1.0-hybrid  66 EKKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLANYDSILKENQK 151
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++e+ 
  mrna28394.1-v1.0-hybrid 152 LKSEVV 157
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.02662122IPR001356Homeobox domain
SMARTSM003891.3E-1965126IPR001356Homeobox domain
SuperFamilySSF466891.84E-1967132IPR009057Homeodomain-like
CDDcd000867.04E-1967123No hitNo description
PfamPF000462.9E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2268129IPR009057Homeodomain-like
PRINTSPR000314.9E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000314.9E-6102118IPR000047Helix-turn-helix motif
PfamPF021831.7E-18122163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMEPGRLFFD PQQGGGGNML FLGSGDQVFR GSRSMMGMEE TSRRRSFFST QDELYEEEYY  60
DEQMPEKKRR LTTEQVHLLE KSFETENKLE PDRKTQLAKK LGLQPRQVAV WFQNRRARWK  120
TKQLERDYDV LKASYDSLLA NYDSILKENQ KLKSEVVTIT EKLEAKDQEA KGAAFAGDHD  180
HDEKCDPVHL LPSEKEMITD VNVPMSLQLS VKVEDRLSSG SGGSAVVDEE SPQLVDSGDS  240
YFPSSCDVHN YDHPHLPHDD HHCMGLVVGV HSEEDDGSDD GRNYFSEVFA AAAVQQQPED  300
GVSMGWWVWS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28394.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304607.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022837e-95HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2P6S5A81e-173A0A2P6S5A8_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004304607.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-95homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]