PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28574.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 630aa    MW: 69987.8 Da    PI: 9.127
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28574.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20193242255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  mrna28574.1-v1.0-hybrid 193 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFHTAEEAARAYDKAAIEFRG 242
                              59*******.**********82....48************************998 PP
2AP264.62.1e-20482531255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  mrna28574.1-v1.0-hybrid 482 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFHTAEEAARAYDKAAIEFRG 531
                              59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-22193251IPR016177DNA-binding domain
SMARTSM003803.4E-39193256IPR001471AP2/ERF domain
PROSITE profilePS5103225.238193250IPR001471AP2/ERF domain
PfamPF008471.2E-13193242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32193250IPR001471AP2/ERF domain
CDDcd000183.04E-33193250No hitNo description
PRINTSPR003671.7E-11194205IPR001471AP2/ERF domain
PRINTSPR003671.7E-11216232IPR001471AP2/ERF domain
SMARTSM003801.3E-39482545IPR001471AP2/ERF domain
PROSITE profilePS5103225.238482539IPR001471AP2/ERF domain
CDDcd000183.04E-33482539No hitNo description
PfamPF008471.2E-13482531IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22482540IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-32482539IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDTHSGVPSI AQERHRKKWH VRTNTACLKC VNSCPSKAYK SPLTLNSQTL TLNSQTLPIQ  60
SLSDNNSLSS TRKHLDLHSM QNIFKRSKLD TAGAPPKSTG NPLPPPPLRL THEQELAVIV  120
SALRNVIAGT TTTMDFNSLF PSYHILAASD ADRCPVCNIK GCLGCNFFPP PAQEENNINS  180
SNKKGPKKRV KKNYRGVRQR PWGKWAAEIR DPRRATRVWL GTFHTAEEAA RAYDKAAIEF  240
RGPRAKLNFP FPDNSPAQAP IQVLPQKQPV VVAETKQETK SVEYSKEMES AGMESEFWER  300
IGEDELFQRC TPKAYINAPK TPFDSQFSNT SPIQSLSHHN KTQSLQLNSA AQLHSMQNSF  360
KRSKFDTAGA PPQLTQNPLP PPPPHLTHDQ ELAVIVSALQ NVIAGTTTTM DFNSLFPSYH  420
CPTLTSSSSS APALLAASDA DTCPVCNIKG CLGCNFFPPP AQEENNINSN NKKGPKKRVK  480
KNYRGVRQRP WGKWAAEIRD PRRATRVWLG TFHTAEEAAR AYDKAAIEFR GPRAKLNFPF  540
PDNSLSMNHE TSMTPAQTPI QKQQVNVAET KQETKSEDSK EMESAGMECE FWERIGEDEL  600
FQQWMMTMDY AADHSSDSGN GSAGNAHSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23192544468ATERF1
3gcc_A9e-23192544468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28574.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2117152e-52KM211715.1 Prunus pseudocerasus EREBP-like factor (ERF2) mRNA, complete cds.
GenBankKT3695432e-52KT369543.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294810.11e-175PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-39EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3Q8TD081e-157A0A3Q8TD08_FRAAN; Transcription factor ERF94
STRINGXP_004294810.11e-174(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-36redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]