PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28596.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 227aa    MW: 25539.9 Da    PI: 7.3035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28596.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-12351011789
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               l kkf+ eh  + + +++++lede+g++++ k+     +  + l++GW++F  a++L egD++vF+++  s+
  mrna28596.1-v1.0-hybrid  35 GLTKKFCCEHL-P-KHDTMIILEDERGEEYQTKY--LAEK--VGLSGGWRGFSIAHELVEGDVLVFHRVTPSK 101
                              4789***9994.3.35679***************..4444..55***********************765455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.0E-1021105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-1335102IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1036102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1236102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.06536110IPR003340B3 DNA binding domain
CDDcd100171.48E-1638103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSTNESLTFQ EPSRVTTPAL IVGTLFFHGC QHENGLTKKF CCEHLPKHDT MIILEDERGE  60
EYQTKYLAEK VGLSGGWRGF SIAHELVEGD VLVFHRVTPS KFKEEYEDVQ PISVENPQKD  120
NTIAYNTIPS PMSNLSEHAK IIQRTRVRST PSISTVHFDA WINLQIGVFS RRKFAVDAEP  180
LESVTDGIVD ANQMMELGEK LKSRRKKKKK GDDGSHGTRS FGFKQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28596.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167349.11e-47B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2P6PM873e-46A0A2P6PM87_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_008236526.12e-35(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-22B3 family protein