PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28610.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 199aa MW: 22900 Da PI: 8.7811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28610.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.3e-20	61	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dg 74 kfY++Y+ GFs+rk++ k++ + +t+r++vCskeg ree+ kk +++ r t ++r +C a l ++ +g mrna28610.1-v1.0-hybrid 61 KFYSSYSLAKGFSMRKHRLDKNRAGTLVTRRDLVCSKEGMREESVKKdakdssghnsnKKRCRGTCRVSRENCPAILIARRCAkRG 146 6*****************************************999999998655555669999*********9998 PP FAR1 75 kwevtkleleHnHela 90 +++v+++ eHnH+la mrna28610.1-v1.0-hybrid 147 VYYVAEFIIEHNHSLA 162 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	61	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDLDSEYISR PEDSVDDKEE TCLSESVQMK DCTHYRGKPY KDLTLEDLVG VEFATIEEVE 60 KFYSSYSLAK GFSMRKHRLD KNRAGTLVTR RDLVCSKEGM REESVKKDAK DSSGHNSNKK 120 RCRGTCRVSR ENCPAILIAR RCAKRGVYYV AEFIIEHNHS LAKPEHRQFM RSHRHVRDND 180 LAQVNALRKV SVRTCCAY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28610.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462185.1	1e-146	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6QC95	6e-61	A0A2P6QC95_ROSCH; Putative transcription factor FAR family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19973	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	8e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna28610.1-v1.0-hybrid