PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28942.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 1006aa    MW: 110570 Da    PI: 5.0705
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28942.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18563357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  mrna28942.1-v1.0-hybrid  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                             6789*****************************************************97 PP
2START168.83.7e-531543612204
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s++ sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i  
  mrna28942.1-v1.0-hybrid 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNTSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSIIPA 238
                              68999*********************************999*****************.8888888888****************9 PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l +++ +a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s +++v
  mrna28942.1-v1.0-hybrid 239 GngGTIELLYMQIYAPTTLAAaRDFWTLRYTTTLEDGSLVVCERSLTSSTGGPTgtpSPSFVRAEMLPSGFLIRPCEGGGSIIHIV 324
                              999**************************************************9999***************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +hvdl++++++++lrsl++s+ + ++k++va+l++ +
  mrna28942.1-v1.0-hybrid 325 DHVDLDAWSVPEVLRSLYESSKIIAQKMTVAALRHIR 361
                              *********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.71164IPR001356Homeobox domain
SMARTSM003894.2E-15268IPR001356Homeobox domain
SuperFamilySSF466892.69E-16566IPR009057Homeodomain-like
CDDcd000863.88E-16565No hitNo description
PfamPF000465.4E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-18763IPR009057Homeodomain-like
CDDcd146863.13E-55796No hitNo description
PROSITE profilePS5084826.858144372IPR002913START domain
CDDcd088751.19E-70148364No hitNo description
Gene3DG3DSA:3.30.530.208.3E-23152358IPR023393START-like domain
SMARTSM002342.0E-49153363IPR002913START domain
PfamPF018528.4E-51154361IPR002913START domain
SuperFamilySSF559611.79E-36154365No hitNo description
PfamPF086702.4E-47688832IPR013978MEKHLA
PfamPF102411.0E-5940988IPR019371Uncharacterised domain KxDL
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL TTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGFMKNKLH SASGTTTDTS  120
CESVVMNGQH QQQHNPTPQH PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNTSGVAA RACGLVSLEP TKVAEILKDR PSWFRDCRCL DVLSIIPAGN  240
GGTIELLYMQ IYAPTTLAAA RDFWTLRYTT TLEDGSLVVC ERSLTSSTGG PTGTPSPSFV  300
RAEMLPSGFL IRPCEGGGSI IHIVDHVDLD AWSVPEVLRS LYESSKIIAQ KMTVAALRHI  360
RQIAQEATGE IQYAGGRQPA VLRTFSQRLC RGFNDAVNGF ADDGWSLLGS DGAEDVTIAI  420
NSSPNKFLGS QYNTSIFPSF GGGVLCAKAS MLLQSVPPAL LVRFLREHRS EWADYGVDAY  480
SAACLKASPY AVPCARPGGF PSSQVILPLA PTVENEEFLE VVRLEGHAYS PEDVALARDM  540
FLLQMCSGVD ENAVGSCAQL VFAPIDESFA DDAPLLPSGF HVIPLDAKTD GPATNRTLDL  600
ASTLEVGASS ARRVNEGDAN SYNLRSVLTI AFQFTFENHM RDSVAAMARQ YVRGVVSSVQ  660
RVAMAIAPSR LSSQIGPKAL PGSPEAQTLA RWIFQSYRIH TGAEIFRLES PSGDAVLKQL  720
WNHPDAIMCC SVKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA GRKVLCSEFS  780
KIMLQGFAFL PAGMCASSMG RPVSYEQAVA WKVVNDEDSN HCLALMFTNW SFPVAAEFHG  840
DSQVSTMDAY NLAESTSMGT VKRVLLYWGE DADYAPVARK DYDDEDHELD YREVSTTDLS  900
SVGRAEDCSW YNHQLQSARM EQQNEKEAIR EASVEVSNEF KTLIDAHDLD SLKQLQHLIL  960
GRLQDGNAVL SHYNEVSENC FAEYSPVFVN FYLAILLLVL ALDGF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28942.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0005520.0KJ000552.1 Prunus persica homeobox protein 14 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293989.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A2P6Q6480.0A0A2P6Q648_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004293989.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]