PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28944.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

BES1

Protein Properties

Length: 160aa MW: 16860.8 Da PI: 9.3319

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28944.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	117.2	2.5e-36	5	124	3	117
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaags 84 sg +++ E+E++k RER+RRai++ki+ GLR++G+ykl raD+neVl+ L+++AGw+ve+DGttyr ++a + mrna28944.1-v1.0-hybrid 5 SGSGRSESEKEKTKMRERQRRAITTKIFHGLRKHGGYKLSPRADINEVLRHLANDAGWLVEPDGTTYRSNVVNCcpacGISKASIA 90 666678899***********************************************************655544311322333333 PP DUF822 85 sasaspesslq.sslkssalaspvesysaspkss 117 a a+p+ss+ + s++asp+ + + s mrna28944.1-v1.0-hybrid 91 TAIATPSSSVVmGGGECSTTASPLRLPEFNSSGS 124 3334455554433344455555554444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.3E-34	8	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MAGTSGSGRS ESEKEKTKMR ERQRRAITTK IFHGLRKHGG YKLSPRADIN EVLRHLANDA 60 GWLVEPDGTT YRSNVVNCCP ACGISKASIA TAIATPSSSV VMGGGECSTT ASPLRLPEFN 120 SSGSGTHSIS PLPNMPEGDL NQQEARASNY TTPVASPRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28944.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295606.1	1e-115	PREDICTED: protein BZR1 homolog 2-like
TrEMBL	A0A2P6Q634	1e-85	A0A2P6Q634_ROSCH; Putative beta-amylase transcription factor BES/BZR family
STRING	XP_004295606.1	1e-114	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13979	16	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	3e-17	beta-amylase 7

Link Out ? help Back to Top
Phytozome	mrna28944.1-v1.0-hybrid