PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29439.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 217aa    MW: 24764.2 Da    PI: 6.7797
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29439.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.8e-101251621954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yps ++++ LA+++gL+ +qV+ WF N R +
  mrna29439.1-v1.0-hybrid 125 FEHflHPYPSDADKQLLAQRTGLSRCQVSSWFVNARVR 162
                              665559******************************98 PP
2BELL90.22.1e-292561872
                     BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                             +Vd+rY++y+eq+q+v+++F+ v+g  +a pYt+lA+ka+SrhFrcLkda++ q+
  mrna29439.1-v1.0-hybrid  2 QVDRRYNHYCEQMQMVVNAFDLVMGFRAAVPYTALAQKAMSRHFRCLKDAVTAQL 56
                             7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-5154IPR006563POX domain
PfamPF075263.9E-25253IPR006563POX domain
PROSITE profilePS5007112.195103166IPR001356Homeobox domain
SMARTSM003891.9E-8106170IPR001356Homeobox domain
CDDcd000862.22E-11106166No hitNo description
SuperFamilySSF466891.92E-16107173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-26109171IPR009057Homeodomain-like
PfamPF059202.0E-17123162IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQVDRRYNHY CEQMQMVVNA FDLVMGFRAA VPYTALAQKA MSRHFRCLKD AVTAQLKHSC  60
ELLGEKDGAG NSGITKGETP RLKMLEQSLR QQRAFHQMGM MEQEAWRPQR GLPERSVNIL  120
RAWLFEHFLH PYPSDADKQL LAQRTGLSRC QVSSWFVNAR VRLWKPLVEQ MFQQEADEEG  180
DVAAASVDQD QMSEQCYNTS DYPAETPMPP ATTTSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-18112170563Homeobox protein Meis2
4xrm_B5e-18112170563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29439.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465433.11e-159PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_011465434.11e-159PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-108BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2P6RMT61e-119A0A2P6RMT6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004300564.11e-163(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-110BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]