PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29441.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 176aa    MW: 19702.2 Da    PI: 5.6285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29441.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.5e-1477170698
                              ..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +++++l+ + l +  +fa+e+   +    + +++ l+++ g +W   ++++ +s +    +  Wk+Fv++n+Lk+gD +vF+l+++
  mrna29441.1-v1.0-hybrid  77 MQKSYLSGC-LKVQGDFAKECvcaS----GFRDVNLQNSAGTTWPAIFSVDVYSVGqRQGRVSWKSFVQDNHLKVGDACVFELMKK 157
                              666777777.99999******6531....4469************999886655542334568*******************9965 PP

                              ..SEE..EEEEE- CS
                       B3  88 ..sefelvvkvfr 98 
                                +  +++v++fr
  mrna29441.1-v1.0-hybrid 158 gcEVPTFKVHIFR 170
                              2555566777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-1865171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1666171IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1471170No hitNo description
SMARTSM010192.2E-573172IPR003340B3 DNA binding domain
PfamPF023626.7E-1277171IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11103172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEIDYPMNSR QDEGEELDDD HDASVEILDV VPFKKRGRTE LASLWMKANE HNVDTGDGAF  60
LRATSFKYSN PHIVVRMQKS YLSGCLKVQG DFAKECVCAS GFRDVNLQNS AGTTWPAIFS  120
VDVYSVGQRQ GRVSWKSFVQ DNHLKVGDAC VFELMKKGCE VPTFKVHIFR AEDAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29441.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024177872.14e-89uncharacterized protein LOC112183768
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1924344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-08B3 family protein