PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29538.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24788 Da    PI: 6.9667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29538.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1956110357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              k++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  mrna29538.1-v1.0-hybrid  56 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASQLGLDPRQVAVWFQNRRARWKN 110
                              45699************************************************95 PP
2HD-ZIP_I/II118.83e-3856147293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkr+l++eqv+lLE +F +e+kLe+e+K +la++Lgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a++++  e+++Le+e+++L
  mrna29538.1-v1.0-hybrid  56 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASQLGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKTAHENVIVEKCKLESEMQKL 141
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l+e
  mrna29538.1-v1.0-hybrid 142 KERLSE 147
                              *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.53651111IPR001356Homeobox domain
SMARTSM003892.7E-1754115IPR001356Homeobox domain
SuperFamilySSF466892.78E-1855120IPR009057Homeodomain-like
PfamPF000466.3E-1756110IPR001356Homeobox domain
CDDcd000863.37E-1556112No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2058118IPR009057Homeodomain-like
PRINTSPR000311.9E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000311.9E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTTTINNQVV DQDHMLLISQ MYPDVYTQIV PQVAATKPRR RRKKSKSGEA DGAGAKKRKL  60
TEEQVTLLEL NFGNEHKLES EKKDRLASQL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL  120
KTAHENVIVE KCKLESEMQK LKERLSETEK EIHRLSERVE GGGSSNSPSS SLSMEANIGG  180
PPPFFGEFGV EEYDDVFYMP QNNYINAMEW MNPYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRKKSKSGEADGAGAKKR
24158RKKSKSGEADGAGAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29538.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300609.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-40 isoform X1
SwissprotO232089e-83ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P6RMK21e-112A0A2P6RMK2_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004300609.11e-160(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-71homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]