PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29558.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 553aa    MW: 61742.8 Da    PI: 6.3931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29558.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.97.3e-961835512374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                              +e L+++A++++s++l+laq +L rl+++       + p g+p+qR+a yf+ AL++ l+    ++ ++   + +s+++ ++++ a
  mrna29558.1-v1.0-hybrid 183 IEELIRAADCFDSDELNLAQVILDRLNQRqrlispnSKPVGKPLQRAAVYFKDALQSLLNT---STGSSPVRNLSSWSEIVQTIRA 265
                              679************************987775555667789******************9...555666666677788******* PP

                     GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetg 162
                              +k fs +sPi+ fsh+t+Nqa+lea++g++ +H+iDfdi+ G+Q+++L+++La+++     +pp lRiT+v+++e   + e + ++
  mrna29558.1-v1.0-hybrid 266 YKGFSGISPIPMFSHFTTNQALLEALNGSSFIHVIDFDIGLGGQYASLMKELAEKAdvsrTNPPVLRITAVVPEE--YAVESRLVR 349
                              *******************************************************9888888***********66..99999**** PP

                     GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..a 246
                              e+L++fA+el+++f++++l+++++e l++++ ++  gE++aV l+  ++r l   ++ ++   ++L  ++++sP vvv+v+ e  a
  mrna29558.1-v1.0-hybrid 350 ENLSQFAQELRIRFQIDFLLVRTFEILSFKAVKFMDGEKTAVLLSPYIMRRL---GAADN-VGAFLGDMRRVSPSVVVFVDGEgmA 431
                              ***************************************************9...44444.778*******************655 PP

                     GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                              + +++sF + f++ le++s +++sl+a +p   e  +k+E++ll+++i+ +v ++g++       +  Wre ++ aG+++v+ls++
  mrna29558.1-v1.0-hybrid 432 ESGATSFRRNFVSGLEFFSIMMESLDAAVPGG-EMVRKIEAFLLRPKIEAAVEAAGRR-------VPPWREVFHGAGMRAVELSQF 509
                              56999***********************9765.66779******************98.......99******************* PP

                     GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  mrna29558.1-v1.0-hybrid 510 ADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 551
                              *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.552156531IPR005202Transcription factor GRAS
PfamPF035142.5E-93183551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRVPVTTPQT NNNINNNQSP NPKPETNLGF HTPSRINPNL CYEPTSVLDL RHSPSPVAAD  60
KPSKVSPISD VLTHHDQPLE WDEQVDWDSI MRDLGLHDDS VPNLKATTTT NTHLNHHHNS  120
EPQIHHLPEY PHPQPFDPTQ LVHSDFSLSE VYSSQNFSHH NLTSYDQTDT HPSLNSNVGF  180
DFIEELIRAA DCFDSDELNL AQVILDRLNQ RQRLISPNSK PVGKPLQRAA VYFKDALQSL  240
LNTSTGSSPV RNLSSWSEIV QTIRAYKGFS GISPIPMFSH FTTNQALLEA LNGSSFIHVI  300
DFDIGLGGQY ASLMKELAEK ADVSRTNPPV LRITAVVPEE YAVESRLVRE NLSQFAQELR  360
IRFQIDFLLV RTFEILSFKA VKFMDGEKTA VLLSPYIMRR LGAADNVGAF LGDMRRVSPS  420
VVVFVDGEGM AESGATSFRR NFVSGLEFFS IMMESLDAAV PGGEMVRKIE AFLLRPKIEA  480
AVEAAGRRVP PWREVFHGAG MRAVELSQFA DFQAQCLLGK VQVRGFHVAK RQAELVLCWH  540
DRALVATSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2820355030378Protein SCARECROW
5b3h_A3e-2820355029377Protein SCARECROW
5b3h_D3e-2820355029377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29558.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300613.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-169SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2P6RML00.0A0A2P6RML0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004300613.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-171GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]