PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29735.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 170aa    MW: 18122.5 Da    PI: 10.2652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29735.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-21960156
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  mrna29735.1-v1.0-hybrid  9 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 60
                             68********.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-14959IPR001471AP2/ERF domain
CDDcd000184.92E-29968No hitNo description
SuperFamilySSF541711.18E-221068IPR016177DNA-binding domain
PROSITE profilePS5103222.7211067IPR001471AP2/ERF domain
SMARTSM003803.4E-351073IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-321067IPR001471AP2/ERF domain
PRINTSPR003674.8E-111122IPR001471AP2/ERF domain
PRINTSPR003674.8E-113349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAGSVPGQPH YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF DTPEEAALAY DGAARSLRGN  60
KAKTNFPAPL TRGGGGGEDL SLDLNVSSAQ WASHSGRLVE FLHTGVLKDV AKSENAAAAP  120
SFVVSRAPRA PVVGSSLVQE GSSTASYLGF VRRGLPIDLN EPPPLWLCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-221073569ATERF1
3gcc_A9e-221073569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29735.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295554.11e-120PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID66e-47ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A3S8T9131e-115A0A3S8T913_FRAAN; Transcription factor ERF60
STRINGXP_004295554.11e-119(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-49ERF domain protein 12