PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29738.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 254aa    MW: 27488.7 Da    PI: 10.242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29738.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202373256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  mrna29738.1-v1.0-hybrid 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 73
                             69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-322380IPR001471AP2/ERF domain
CDDcd000181.41E-182381No hitNo description
PfamPF008475.2E-142372IPR001471AP2/ERF domain
SMARTSM003801.3E-392386IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942380IPR001471AP2/ERF domain
PRINTSPR003675.4E-112435IPR001471AP2/ERF domain
PRINTSPR003675.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAPRTEKSAA VSAKGNNNVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
RAYDAAAREF RGAKAKTNFP IPSENVNLSL FKKKVNVNNG GNSNSRSPSQ SSTVESSSRE  120
PALMVESSPL DLNLGHGVAG FGAPMRFPFQ HPHHQIPPVG AVIGVPTAAA NHVLYFDSVF  180
RAGMVKNHQQ YQQQLRFDRN LMHRDFLSGG GFTGGSQSDS DSSTVVDLNQ HDLPRAGGGF  240
DLDLNLPPPV ELA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-212381261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-211981164ATERF1
3gcc_A8e-211981164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29738.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0468222e-46JX046822.1 Callerya speciosa microsatellite Ndl_004 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293846.10.0PREDICTED: ethylene-responsive transcription factor 4
TrEMBLA0A3S8T9860.0A0A3S8T986_FRAAN; Transcription factor ERF61
STRINGXP_004293846.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-28erf domain protein 9