PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29800.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 232aa MW: 25832.5 Da PI: 5.1431

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29800.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.5	1.8e-28	71	168	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +kkdrh k+ T +g+RdRR Rl a++a++f+d+qd+LG+ ++s +i+WL+q+ak++i +l ++s+ ++ ++++ mrna29800.1-v1.0-hybrid 71 STKKDRHTKVLTTKGPRDRRFRLAAQTAIEFYDVQDRLGYARPSMAIDWLIQKAKASIEALGNSSTVQQ-----------PQQHQG 145 579**********************************************************99944333...........111112 PP TCP 88 gkaaksaakskksqksaasalnla 111 g a +++ + ++ +++a ++n++ mrna29800.1-v1.0-hybrid 146 GPAVPETVEIHQHFNESA-MNNVS 168 222222222222222222.34444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-28	72	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.639	73	131	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MTSHSQGLYL QLSQLRDSKK QEEEENEVPN QAGDAQEQQD YEARVEAKQP NMNDGRYGKI 60 VKVQGGHIVR STKKDRHTKV LTTKGPRDRR FRLAAQTAIE FYDVQDRLGY ARPSMAIDWL 120 IQKAKASIEA LGNSSTVQQP QQHQGGPAVP ETVEIHQHFN ESAMNNVSKE PVLGFAEEVL 180 NYATNLSEAD FMEMAISQSL MAYNYYTGAG GYNAGDDGEC SSFNSSYVSW N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-15	78	131	1	54	Putative transcription factor PCF6
5zkt_B	2e-15	78	131	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29800.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462025.1	1e-175	PREDICTED: transcription factor PCF5-like
TrEMBL	A0A2P6Q4L3	2e-94	A0A2P6Q4L3_ROSCH; Putative transcription factor TCP family
STRING	XP_008225215.1	2e-52	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14863	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-35	TCP family protein

Link Out ? help Back to Top
Phytozome	mrna29800.1-v1.0-hybrid