PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29863.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 249aa    MW: 29028.6 Da    PI: 7.789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29863.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.31e-12119220182
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklk 67 
                              kfYn YA+  GF++rksk+++ ++++ +++r++ Csk g + +++++                   ++  r+   +tr+ C+ak++
  mrna29863.1-v1.0-hybrid 119 KFYNYYAHVRGFNTRKSKMYRYRTSDFVYRREWECSKTGVNPKKRRNpvevaekkrlvdiketkrrNHMLRKGYRQTRCRCTAKFV 204
                              6*******************************************999*************7655544444557789********** PP

                     FAR1  68 vkkek.dgkwevtkle 82 
                              vk    ++k+ v++ e
  mrna29863.1-v1.0-hybrid 205 VKWCLrRKKYFVAQTE 220
                              **98879999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-10119220IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVDTDDDLDE SWLCSTDHLY ITDESLHDDS EYEASVCGLE QSPSGSTRVP KYEFVGPVNS  60
TGVASSATEI DLSNDLIDDI VLNMKEPSTG DKFNRLNIRD ITYDDVSDLL FEDYEAAGKF  120
YNYYAHVRGF NTRKSKMYRY RTSDFVYRRE WECSKTGVNP KKRRNPVEVA EKKRLVDIKE  180
TKRRNHMLRK GYRQTRCRCT AKFVVKWCLR RKKYFVAQTE RRFADPNFYL AYEVLLPGFS  240
RLTPDSIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29863.1-v1.0-hybrid