PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30046.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 178aa    MW: 19520.1 Da    PI: 7.8569
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30046.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.81.3e-45141131100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq
  mrna30046.1-v1.0-hybrid  14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQ 99 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+++la +++e
  mrna30046.1-v1.0-hybrid 100 IDVLQTQLAIAQAE 113
                              *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.30513114IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKEISGRKQG GMSPCAACKL LRRRCAQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ  60
ELPEQQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLAIA QAEVVHMKMN  120
QFPSASSPAA TTSENTSPVS VMPNNNNSQH HYHPHQSTKS FFTMDMVVDQ ANSLWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-48101227119LOB family transfactor Ramosa2.1
5ly0_B2e-48101227119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30046.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-47AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294159.11e-132PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE92e-65LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2P6Q8S71e-109A0A2P6Q8S7_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004294159.11e-131(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-66LOB domain-containing protein 4