PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30101.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 592aa    MW: 64598.5 Da    PI: 7.2497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30101.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.9e-18132218186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                              +W++  + +L++a+ ++ ++l+rg+l++ +Weev+ ++  +++  ++s +qCk+k +nl+kryk +++++ + + +s s++p+f++
  mrna30101.1-v1.0-hybrid 132 EWSDGAIACLLDAYLDKFTQLNRGNLRGRDWEEVAVVVsqKSERQTKSVEQCKNKVDNLKKRYKLERHRMTN-SGNSPSNWPWFKR 216
                              5*************************************766666789***********************98.588999******* PP

                 trihelix  85 le 86 
                              +e
  mrna30101.1-v1.0-hybrid 217 ME 218
                              *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.1E-21130220No hitNo description
Gene3DG3DSA:3.40.1160.101.3E-64266500IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.673269504IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.83E-52270500IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.50E-115272500No hitNo description
PfamPF006968.8E-22273483IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MASCDDDFAI LGSNDSNPNH RHAPPAPHRI PPPYAARFAT RTNPQPVSSG EKTNAGEDQD  60
DGEEYADAAA FNPFDSGTDQ NDVASKRKDQ SDELSDGAGG GGGGAGGSSY TIIRRSKSSA  120
VSAGEYRKDR EEWSDGAIAC LLDAYLDKFT QLNRGNLRGR DWEEVAVVVS QKSERQTKSV  180
EQCKNKVDNL KKRYKLERHR MTNSGNSPSN WPWFKRMEQI VGNSVPTKAT SDDDRGVSSS  240
GITPLKSKRN ASAITSPAPL MNKHPKVCLK WRRVVFKISG AALAGTAANN IDPKLTMLIA  300
REVAMACRSG VEVAIVVGGR NFFCGNTWVN ETGLDRSTAY QAGMMTTVMN SILLQSAFEK  360
MGIQTRVQSA FSMPELAEPY NRQRAIRHLE KGRVVIFAGI GAGTGNPLFT TDTAAALRAS  420
EIHAEAVLKG TNVDGVYDRT SQDNNFTFQH ISFRDLVVRG EHNMDTMALT LCEDNRIPVV  480
IFNLLEAGNI SKALCGEQVG VKLGVFAVAG LPAETAYPWQ NDLSPDYAEI LLLRKIVDAY  540
EDSFFIVLSK ADARKLSIGV SVKFRNNDIW IGGSIKNDDE FGIWYCLSHS Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-582695007236Uridylate kinase
3ek5_B4e-582695007236Uridylate kinase
3ek5_C4e-582695007236Uridylate kinase
3ek5_D4e-582695007236Uridylate kinase
3ek5_E4e-582695007236Uridylate kinase
3ek5_F4e-582695007236Uridylate kinase
3ek6_A4e-582695007236Uridylate kinase
3ek6_B4e-582695007236Uridylate kinase
3ek6_C4e-582695007236Uridylate kinase
3ek6_D4e-582695007236Uridylate kinase
3ek6_E4e-582695007236Uridylate kinase
3ek6_F4e-582695007236Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30101.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305371.10.0PREDICTED: uncharacterized protein LOC101297570
TrEMBLA0A2P6RBE60.0A0A2P6RBE6_ROSCH; Putative UMP kinase transcription factor Trihelix family
STRINGXP_004305371.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein