PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30146.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 417aa    MW: 46274.1 Da    PI: 4.8081
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30146.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.11.8e-30321282102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.....TEEE---SSBTTTTXTTSEEEE CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.....gFkkvkdeekkskskekiweFk 82 
                              Fl+k++++++d++l+ +isw + g sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y     gF+k+++++         weF+
  mrna30146.1-v1.0-hybrid  32 FLSKTFDLVDDPALDLIISWGSAGASFVVWDPVEFSRLVLPRNFKHNNFSSFVRQLNTYvgriqGFRKIDTDK---------WEFA 108
                              9**********************************************************88888888888887.........**** PP

                              ESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                              ++ F +gk++ll++i+r+ks
  mrna30146.1-v1.0-hybrid 109 NEAFLRGKRHLLKNIQRRKS 128
                              ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.7E-5128126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3028126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3329126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2732126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-123255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-127082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-128395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGESMELEGQ LSGCVGVPQP LQCLQETPVP PFLSKTFDLV DDPALDLIIS WGSAGASFVV  60
WDPVEFSRLV LPRNFKHNNF SSFVRQLNTY VGRIQGFRKI DTDKWEFANE AFLRGKRHLL  120
KNIQRRKSCQ SLQIGSFTGP SAEAVRPGLE GEVESLRNQR SLLMQEVVDL QQQQRGTAHQ  180
MKTVNERLVS AEQRQKQMVS FLAKMLQNPA FAARLQQKRE QKVIGSPTGQ RKFVKARERE  240
VGKSDPYVEG QIVKYQPAWR IHTMSSAVPD VNAVPTENPP DHEQEGEGAS SIVTEDPLSK  300
GKSVVTQLEV NPEPCISFQD DLMKEKPFEE LSFPGIESMV KQEDIWSMGF DASAGMSSCS  360
SGFWGNPINY DVPEMGTSDG LFDIWDIGAL QAAGGSGIDK WPADESAFDE RASQDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2291266129Heat shock factor protein 1
5d5v_B2e-2291266129Heat shock factor protein 1
5d5v_D2e-2291266129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213222RLQQKREQKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30146.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466795.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1B0V8E30.0A0A1B0V8E3_FRAVE; Heat shock factor A3a (Fragment)
STRINGXP_004305364.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-104heat shock transcription factor A3