PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30169.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 332aa MW: 36060.1 Da PI: 4.4123

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30169.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.6	2.9e-15	258	326	2	70
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 + lL++cAeav+ +d a++lL+++++++sp gd +qRl ++f++AL+a la+++sely +l+++++s mrna30169.1-v1.0-hybrid 258 RGLLISCAEAVAVDDRGTASELLKQIRQHSSPFGDYTQRLSHCFANALEAWLAGTGSELYTTLATKRAS 326 679***********************************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.071	231	331	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-12	258	326	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MLNEYPSVDL FDDLSFLDPN PMNSALSSSF SPVGDDGEFS NTVIKHINQV LMEEDMEPTP 60 CLFPDPLVLQ ATEESLYEII GAGKCSTSLD QNPLWVDQNE YGNGNEMVGS YRSELMVRDA 120 VRAEDGSKFL LRGELITAEG NKPYTVANSK AGNVVVRTQK NGSEHVRVGS RGNNSHLREE 180 VELEDGRNDK QSVVYVDDEE GELSDSFGKA LLGGKAVESK EDQVCQNGAN NGLQQDVLVS 240 QKACGMKRGN KKEVIDLRGL LISCAEAVAV DDRGTASELL KQIRQHSSPF GDYTQRLSHC 300 FANALEAWLA GTGSELYTTL ATKRASAVLG K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30169.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2P6QIZ9	1e-152	A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-35	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30169.1-v1.0-hybrid