PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30170.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 251aa MW: 28141.4 Da PI: 4.4016

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30170.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71.3	1.9e-22	153	245	281	373
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 r E+e++gre+vn+vaceg+er+ r et+++W+ r ++aGF+++pl+ ++++++k +++ ++ + v+e+ ++++gWk+r mrna30170.1-v1.0-hybrid 153 MRLGFEKEFIGREVVNIVACEGTERTVRPETYKQWQVRNMRAGFRQLPLDREVMNKIKDKVKMGYNPDFVVDEDGRWMLQGWKGRI 238 56778**********************************************************999************** PP GRAS 367 LvsvSaW 373 ++ +W mrna30170.1-v1.0-hybrid 239 IFGSACW 245 **999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.538	1	226	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-20	153	245	IPR005202	Transcription factor GRAS

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDPRFSENPN FNDQTLLPDM LNEYRSSEPL KDLSFLDPNP SNSALSSSSS PEGDEFSDSV 60 LKYINQVLME EDMESKPCMF HDPLVLQATE ESLYEVIGGG KYPTSQDQNP LCVDRIVQSP 120 DGGYSSVSFS DSTHSSSSPG PSSDSCMVNA PFMRLGFEKE FIGREVVNIV ACEGTERTVR 180 PETYKQWQVR NMRAGFRQLP LDREVMNKIK DKVKMGYNPD FVVDEDGRWM LQGWKGRIIF 240 GSACWAPSKS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30170.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024199030.1	3e-62	scarecrow-like protein 14
Swissprot	Q9XE58	5e-41	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIY8	5e-61	A0A2P6QIY8_ROSCH; Putative transcription factor GRAS family
STRING	XP_004295968.1	2e-56	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	4e-42	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna30170.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]