PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30176.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 953aa    MW: 105257 Da    PI: 4.6984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30176.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.31.4e-14457537181
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                              l++lL+ cA+avs +d +  ++lL+++++++sp gd  qRla++f+++L+ar+a++++++    ++ ++++++ +e l+++
  mrna30176.1-v1.0-hybrid 457 LRNLLILCAQAVSVNDYRTSTELLKQIRQHSSPFGDGSQRLAHFFANGLEARMAGTGTGTQIFYTSLASKKTSAVEILKSY 537
                              6899***************************************************77776655555555555566666665 PP
2GRAS50.83.1e-16846913370
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                              + L++cA+av+s d+++a +lL+++++++sp+gd++qRla+yf+ +L+ rla+  +  y+ +++ + s
  mrna30176.1-v1.0-hybrid 846 TMLTQCAQAVASYDQRNAVELLKQIRQHSSPYGDATQRLAHYFADGLEVRLAGARTPSYSPIASMQIS 913
                              689**************************************************888888888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.846431538IPR005202Transcription factor GRAS
PfamPF035145.0E-12457537IPR005202Transcription factor GRAS
PROSITE profilePS5098513.494818952IPR005202Transcription factor GRAS
PfamPF035141.1E-13846913IPR005202Transcription factor GRAS
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MDPTYTGLPD FMNDIDFEPM LPNSSQFPDI SNQYQFNQLS PDLDFLSNQF SIPPEPESGN  60
LVPPISVSTE GESFNPNGGS FSGPTTVSPG VDSPSSDDID FSETVFKYVN QMLLEENVEQ  120
MPIMFHDPLG LRVTEKSFFD VLGQQYPFSP NQQQQQPQQQ QQTLYVDQPN RQPLYVDQKV  180
ESPDDYFAGS SSDFNASSSS PSTGSSNSAD YQSRGESGEQ KPSFSQTSLS SDSVNHSTSN  240
SNSQPSLPLT NSLSTFGDGM LEASVNQFLA QNIFTDSESV LQFQRGVEEA SKFLPKVNPL  300
VIDLESSSVS SEVKGHASTV VVKKEKSERK TSPSKRRGRR NSPNGSMERK KSPNGSKGKK  360
NHEREDVDSE GRSSKQSAVF KEEMEEEEEE LSELFDKVLL CTDGGNQSSC GSCGDNVDVK  420
NEESKNLQPN GQPLASNGEG GKARAKKQGK KKETVDLRNL LILCAQAVSV NDYRTSTELL  480
KQIRQHSSPF GDGSQRLAHF FANGLEARMA GTGTGTQIFY TSLASKKTSA VEILKSYQGS  540
VSNYSYPDHG NGFEVNHELV NPVFHPTNLD LPSDSSTSFN PASDGYSGDS NDYNNPVLKY  600
ISDILLEEDI EDKPCMLQDC LALQAAEKSF YDVLNQKDST TLHQSFEYSD DYRNSCFSNG  660
GAILGKTYGV ADPSETCHVQ SSLVQCLSDT SLVTDTLSKL HSLGDSGRVE EANKLVENFK  720
IIDAEKYQLM PRGSQTLVGS NSASQQQNDG YNSAYRSEAK KNRQRQDSHC PEEWRSNKQS  780
VAYCADDSEP QDMFDKALLF QGVNHESAES ISHHDCSNVG SRQPKGSKSA RSKRQNKKEK  840
VVDLCTMLTQ CAQAVASYDQ RNAVELLKQI RQHSSPYGDA TQRLAHYFAD GLEVRLAGAR  900
TPSYSPIASM QISTVEILKS YQIDFRIDED EQWMLQGWKG RVLMALSLWK RE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30176.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461310.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A2P6QJ090.0A0A2P6QJ09_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295968.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-51SCARECROW-like 14